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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014913.1_1897_1992_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1897 - 1992
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
TGTCCCTTGCCC
Flanking Amino Acid:
AVHEVIVTVQEKPATPQCWT
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
72.2
0.5
0.8
65.4
30.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47
-0.2
3.5
72.43
38.6

Associated Gene:

Gene:
VSIG8
Ensembl Gene ID:
ENSAPLG00000018508
Chromosome:
PEDO01014913.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039717
670 - 3775
3106