Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014943.1_1735_4454_R

Intron Information:

Intron Rank:

145911

Intron Class:

major

Intron Phase:

Intron Coordinates:

1735 - 4454

Intron Length:

2720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGCATCT

5'SS Class:

major

3'SS Sequence:

TATTTCTGGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TTTTGTTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.2

40.7

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

72.9

0.52

1.1

73.6

41.5

Minor 5ss

44.7

-0.6

3.2

45.1

Minor BPS

60.1

0.39

82.98

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025904

Chromosome:

PEDO01014943.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029401

772 - 5037

4266