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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014981.1_107_891_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107 - 891
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCGAT
U12 Branch Point Sequence:
CCCCCCCGATCC
Flanking Amino Acid:
KKLKECLSIECCGTPLELRG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
47.5
-0.1
1.3
43.7
39.4
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.6
-0.7
1.9
45.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017477
Chromosome:
PEDO01014981.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038747
17 - 1075
1059