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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014981.1_996_1035_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
996 - 1035
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCCCTGGG
5'SS Class:
weak_major
3'SS Sequence:
CGGCACCGAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACCGAG
U12 Branch Point Sequence:
GGGCCCGGCACC
Flanking Amino Acid:
GGSNLWGETKRPRPSPTPRP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.4
48
45
Major BPS
40
-0.6
1.5
33.5
34
Major PPT
50.3
0.01
1.1
43.7
37.2
Minor 5ss
22.1
-3.2
3.9
31.5
42.8
Minor BPS
38.7
-0.9
2.3
46.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017477
Chromosome:
PEDO01014981.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038747
17 - 1075
1059