Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015002.1_10082_10575_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10082 - 10575

Intron Length:

494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

CCTCCTTTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

GTGCCCTGAGCC

Flanking Amino Acid:

ASRRNWFKITFHYDHNRAQF

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.3

57.1

42.2

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

81.2

0.7

79.4

26.1

Minor 5ss

29.4

-2.4

3.1

37.2

40.3

Minor BPS

50.8

0.01

1.7

62.13

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024400

Chromosome:

PEDO01015002.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041308

6229 - 12288

6060