Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015002.1_4155_4355_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4155 - 4355

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTGGGGCTG

5'SS Class:

weak_major

3'SS Sequence:

CGGCCTCCCCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CTGCCCTGACCC

Flanking Amino Acid:

RGWRGSGELGCSLIVAAGCV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.7

0.06

1.2

44.3

44.9

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

59.9

0.22

0.8

50.6

34.1

Minor 5ss

29.5

-2.3

3.6

38.2

46.8

Minor BPS

49.6

-0

1.8

60.56

44.4

Associated Gene:

Gene:

TMEM223

Ensembl Gene ID:

ENSAPLG00000023523

Chromosome:

PEDO01015002.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038617

3856 - 4753

898