Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015002.1_7756_9101_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7756 - 9101

Intron Length:

1346

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCCCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CCATGCTGACTG

Flanking Amino Acid:

DAFRDQATYVSSVRERFPKL

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

1.2

85.2

32.2

Major BPS

66.3

0.4

1.1

41.8

Major PPT

69.3

0.43

0.9

65.3

30.5

Minor 5ss

-1.8

3.3

49.7

46.6

Minor BPS

40.7

-0.8

40.17

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024400

Chromosome:

PEDO01015002.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041308

6229 - 12288

6060

ENSAPLT00000025912

6229 - 12288

6060

ENSAPLT00000021633

6229 - 12288

6060