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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015007.1_2322_2432_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2322 - 2432
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAAAAGA
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
ATGGGCACAACA
Flanking Amino Acid:
LATIDSQEDLHFLLHYGRPL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
58.9
39.8
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
28.7
-2.4
2.7
29.8
36.6
Minor BPS
42.3
-0.5
2.2
54.83
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022135
Chromosome:
PEDO01015007.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023641
21 - 2779
2759