Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015007.1_758_1202_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

758 - 1202

Intron Length:

445

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATAAC

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTGTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

ACGTCCTTACCA

Flanking Amino Acid:

MAETLPDAGEDPTAVMMS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

83.8

27.2

Major BPS

68.9

0.47

59.6

38.6

Major PPT

70.7

0.47

64.4

41.6

Minor 5ss

35.4

-1.7

2.8

44.9

43.2

Minor BPS

65.1

0.47

1.7

69.31

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022135

Chromosome:

PEDO01015007.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023641

21 - 2779

2759