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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015015.1_149_248_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
149 - 248
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGAGGG
5'SS Class:
major
3'SS Sequence:
AGAAGGTGACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGAGAA
U12 Branch Point Sequence:
GAGAAGGTGACA
Flanking Amino Acid:
GPGGGHGGSRGGGGGGGPGG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
47.7
43.1
Major BPS
48.4
-0.1
1.1
44.5
38.7
Major PPT
42.9
-0.4
1.2
27.3
40.6
Minor 5ss
22.5
-3.2
3.2
20
37.8
Minor BPS
34.7
-1.2
2.5
41.5
39

Associated Gene:

Gene:
PFDN2
Ensembl Gene ID:
ENSAPLG00000024075
Chromosome:
PEDO01015015.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033512
102 - 739
638