Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015051.1_2139_2807_F

Intron Information:

Intron Rank:

135104

Intron Class:

major

Intron Phase:

Intron Coordinates:

2139 - 2807

Intron Length:

669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGAG

5'SS Class:

major

3'SS Sequence:

GATTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCAGAT

U12 Branch Point Sequence:

TGACACTCAGAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

63.9

42.4

Major BPS

61.8

0.29

1.1

58.3

39.2

Major PPT

86.2

0.81

0.8

80.9

36.4

Minor 5ss

27.2

-2.6

3.7

36.3

48.1

Minor BPS

42.5

-0.4

1.9

58.82

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022696

Chromosome:

PEDO01015051.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041255

1644 - 3071

1428