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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015068.1_1425_1625_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1425 - 1625
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTCTCTGAACG
Flanking Amino Acid:
PLPARPLPPAGMGSKPSPCS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
68.2
0.41
0.9
58.4
38.4
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
61.7
0.23
1.6
65.4
42.2

Associated Gene:

Gene:
TEPSIN
Ensembl Gene ID:
ENSAPLG00000026324
Chromosome:
PEDO01015068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044386
227 - 3543
3317
ENSAPLT00000036447
21 - 3543
3523
ENSAPLT00000024846
17 - 2590
2574
ENSAPLT00000020414
21 - 3543
3523