About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015068.1_1705_1810_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1705 - 1810
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCTC
U12 Branch Point Sequence:
TGCCCCTTCCCC
Flanking Amino Acid:
LNQKVRAAAQDLASVLFSDA
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
28.7
-1.3
4.1
59.2
39.1
Major PPT
69.7
0.44
0.9
65.4
30.5
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
40.3
-0.7
3.6
60.42
44.7

Associated Gene:

Gene:
TEPSIN
Ensembl Gene ID:
ENSAPLG00000026324
Chromosome:
PEDO01015068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020414
21 - 3543
3523
ENSAPLT00000044386
227 - 3543
3317
ENSAPLT00000036447
21 - 3543
3523
ENSAPLT00000024846
17 - 2590
2574