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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015068.1_1879_2077_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1879 - 2077
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TCGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TCTCCCAAAAAC
Flanking Amino Acid:
RNAAFIREAAAFTGPPDPLH
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
54
0.1
1
59.7
32.6
Major PPT
76.4
0.59
0.9
69.4
36.8
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
47.3
-0.2
2
62.19
42.7

Associated Gene:

Gene:
TEPSIN
Ensembl Gene ID:
ENSAPLG00000026324
Chromosome:
PEDO01015068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036447
21 - 3543
3523
ENSAPLT00000024846
17 - 2590
2574
ENSAPLT00000020414
21 - 3543
3523
ENSAPLT00000044386
227 - 3543
3317