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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015068.1_2172_2289_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2172 - 2289
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
ACCCCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGACCCCCAACC
Flanking Amino Acid:
QSGSCRVKLKVLKILLHTCA
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
65.7
0.35
1
61
34.4
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
49.3
-0
1.9
63.54
40.8

Associated Gene:

Gene:
TEPSIN
Ensembl Gene ID:
ENSAPLG00000026324
Chromosome:
PEDO01015068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044386
227 - 3543
3317
ENSAPLT00000036447
21 - 3543
3523
ENSAPLT00000024846
17 - 2590
2574
ENSAPLT00000020414
21 - 3543
3523