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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015068.1_333_709_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
333 - 709
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCACCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCCTTTTCACCA
Flanking Amino Acid:
ASRDLANGAERCGLLNCEVV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.8
0.33
1
64
36.2
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
45
-0.3
1.8
49.67
42.5

Associated Gene:

Gene:
TEPSIN
Ensembl Gene ID:
ENSAPLG00000026324
Chromosome:
PEDO01015068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020414
21 - 3543
3523