About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015087.1_2248_4591_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
2248 - 4591

Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTAGGTTTT

5'SS Class:
strong_major

3'SS Sequence:
CTTTCCCTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AGCTCAG

U12 Branch Point Sequence:
TGCAGCTCAGCA

Flanking Amino Acid:
TAHARGQGECDPLDHEPAIS

Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.4
0.74
1
80.5
34.9

Major BPS
48.8
-0
1.5
57.1
41.8

Major PPT
86.7
0.83
0.7
81
24.1

Minor 5ss
44.9
-0.5
3.2
63.2
43.8

Minor BPS
42.8
-0.5
2.1
53.24
44.6

Associated Gene:

Gene:
ABL1

Ensembl Gene ID:

Chromosome:
PEDO01015087.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

496 - 4862
4367