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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015098.1_683_1163_R

Intron Information:

Intron Rank:
145236
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
683 - 1163
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCGAGTAAG
5'SS Class:
major
3'SS Sequence:
ACAACATGTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.2
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
53.9
0.09
1
43.9
41.7
Minor 5ss
18.9
-3.6
3.2
16
28.5
Minor BPS
57.5
0.23
1.8
73.44
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025558
Chromosome:
PEDO01015098.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017651
21 - 1372
1352