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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015135.1_2801_2839_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2801 - 2839
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTCAGATTT
5'SS Class:
weak_major
3'SS Sequence:
TAATTCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGATTTTAAAGT
Flanking Amino Acid:
DAEVKVEQLAKGCEKCQQSL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.3
66.6
40
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.7
0.47
1.1
68.5
41.9
Minor 5ss
41.5
-0.9
3.2
63
42.1
Minor BPS
47.5
-0.1
1.9
62.97
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030623
Chromosome:
PEDO01015135.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038760
724 - 6570
5847
ENSAPLT00000037972
2202 - 6570
4369
ENSAPLT00000024805
41 - 6570
6530
ENSAPLT00000022474
1232 - 6570
5339