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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015135.1_4480_4682_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4480 - 4682
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
ACCTTCCCAACA
Flanking Amino Acid:
QQLTMPCNQQGTLHTTDMSC
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
47.9
-0.1
1.9
58.12
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028102
Chromosome:
PEDO01015135.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048521
3951 - 5479
1529
ENSAPLT00000047585
21 - 5392
5372