Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015139.1_456_661_F

Intron Information:

Intron Rank:

148093

Intron Class:

major

Intron Phase:

Intron Coordinates:

456 - 661

Intron Length:

206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGAAGG

5'SS Class:

major

3'SS Sequence:

TTCTTTCTATTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCAAT

U12 Branch Point Sequence:

TTCAGCTCAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

59.3

45.3

Major BPS

61.8

0.29

1.4

70.7

42.6

Major PPT

0.7

0.8

82.3

Minor 5ss

31.9

-2.1

3.1

37.2

42.1

Minor BPS

49.1

-0

63.08

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029733

Chromosome:

PEDO01015139.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027233

160 - 1618

1459