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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015159.1_2980_3506_F

Intron Information:

Intron Rank:
132472
Intron Class:
major
Intron Phase:
Intron Coordinates:
2980 - 3506
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CACTTCTAAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
60.8
44.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.9
0.74
0.7
81.5
30.5
Minor 5ss
36.2
-1.6
3.5
44.7
44.5
Minor BPS
47.4
-0.3
1.8
48.75
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021202
Chromosome:
PEDO01015159.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039797
21 - 4115
4095