Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015202.1_530_1218_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

530 - 1218

Intron Length:

689

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGAAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTAAACTCAACT

Flanking Amino Acid:

QKENLRKFYKGKKYKPLDLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.4

1.05

0.8

80.7

33.8

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

67.3

0.39

64.2

40.7

Minor 5ss

34.5

-1.8

2.8

42.4

44.3

Minor BPS

60.1

0.39

1.8

79.74

41.3

Associated Gene:

Gene:

RPL35

Ensembl Gene ID:

ENSAPLG00000004377

Chromosome:

PEDO01015202.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004487

101 - 1368

1268