Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015219.1_2228_2481_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2228 - 2481

Intron Length:

254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGTC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TTCCTGCTGACA

Flanking Amino Acid:

REGKQLTLHELIINEAAAQF

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.8

76.4

32.8

Major BPS

66.3

0.4

1.1

41.8

Major PPT

71.3

0.48

0.8

64.1

31.2

Minor 5ss

28.3

-2.5

3.6

40.1

46.3

Minor BPS

43.9

-0.4

2.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017838

Chromosome:

PEDO01015219.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029090

1430 - 4069

2640