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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015219.1_2616_3237_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2616 - 3237
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
CCCTCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CGCGCCTGACGC
Flanking Amino Acid:
STYLSSLKVAGTQPEESGAS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
67.1
0.39
0.8
61.3
27.8
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
40.3
-0.7
2
43.01
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017838
Chromosome:
PEDO01015219.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029090
1430 - 4069
2640