Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015219.1_3738_3834_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3738 - 3834

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CTCCTTGCAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TCTCCTTGCAGC

Flanking Amino Acid:

SGESLDSHLQAGACPRLTPP

Intron Amino Acid Position:

371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

63.1

43.4

Major BPS

66.3

0.4

1.1

41.8

Major PPT

69.7

0.44

0.9

65.7

34.7

Minor 5ss

26.2

-2.7

2.9

22.9

37.3

Minor BPS

43.9

-0.5

2.1

56.01

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017838

Chromosome:

PEDO01015219.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029090

1430 - 4069

2640