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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015245.1_2450_2656_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
2450 - 2656
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATCCACG
5'SS Class:
weak_minor
3'SS Sequence:
AACGCGGTCGCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GGCTCCTTAACG
Flanking Amino Acid:
KLLERFLLDGFRPQQLSTFA
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49
-0
1.2
44.6
42.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
55.1
0.12
1
46
40.5
Minor 5ss
63.7
0.46
2
72.7
38
Minor BPS
74.4
0.63
1.4
69.14
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026647
Chromosome:
PEDO01015245.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022035
2176 - 2884
709