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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015248.1_1803_1896_F

Intron Information:

Intron Rank:
133528
Intron Class:
major
Intron Phase:
Intron Coordinates:
1803 - 1896
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTGCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.9
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
89
0.88
0.6
81.6
30.5
Minor 5ss
24.7
-2.9
3.1
29.4
43.5
Minor BPS
48.9
-0
2.1
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021824
Chromosome:
PEDO01015248.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037113
21 - 2895
2875