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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015278.1_3081_3492_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3081 - 3492
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCACCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ACAGCTCTAACT
Flanking Amino Acid:
CESGPTDNPEECKDVNKVAY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
65.4
0.35
1
55
40.4
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
51.9
0.14
1.8
67.6
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021610
Chromosome:
PEDO01015278.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018374
1300 - 5306
4007