Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015282.1_1134_1348_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1134 - 1348

Intron Length:

215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATAAC

U12 Branch Point Sequence:

TACCCTATAACC

Flanking Amino Acid:

NKYSEGYPGKRYYGGAEVVD

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

61.1

43.7

Major BPS

65.6

0.39

1.1

67.7

34.6

Major PPT

66.9

0.38

0.7

57.1

27.1

Minor 5ss

-2.5

3.5

37.8

47.1

Minor BPS

57.3

0.21

1.6

66.06

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003905

Chromosome:

PEDO01015282.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004025

21 - 4042

4022