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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015292.1_1221_1325_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1221 - 1325
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCAGGA
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GGGCTGTGACCG
Flanking Amino Acid:
MSPNQLCNVPNSSLLGHPFP
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
48.5
42.5
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
34.8
-1.7
3.6
46.7
48.6
Minor BPS
35.7
-1.2
2.1
34.66
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019614
Chromosome:
PEDO01015292.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033586
109 - 1894
1786