Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015292.1_552_841_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

552 - 841

Intron Length:

290

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAGG

5'SS Class:

major

3'SS Sequence:

TTTCCACTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

TCCCTTTCCACT

Flanking Amino Acid:

RRIRGPLLAQEMPSVSVLDY

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

57.8

46.6

Major BPS

79.1

0.72

69.3

38.4

Major PPT

79.5

0.66

0.8

73.8

29.9

Minor 5ss

29.9

-2.3

3.3

39.8

45.8

Minor BPS

44.9

-0.3

1.9

60.3

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019614

Chromosome:

PEDO01015292.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033586

109 - 1894

1786