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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015305.1_415_820_F

Intron Information:

Intron Rank:
140902
Intron Class:
major
Intron Phase:
Intron Coordinates:
415 - 820
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGGAA
U12 Branch Point Sequence:
GCACCCGCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
34.2
Major BPS
46.4
-0.2
1.3
43
39.5
Major PPT
71.4
0.48
0.8
61.7
34.9
Minor 5ss
41.9
-0.9
2.7
55
42.2
Minor BPS
39.7
-0.7
2.4
55.32
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025875
Chromosome:
PEDO01015305.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048213
21 - 1731
1711