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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015319.1_836_1040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
836 - 1040
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
TCTGTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AGCTGCTGACTG
Flanking Amino Acid:
RTLFHCNCTRRLARSLRRAK
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72
0.5
0.9
64.8
36.5
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
41.5
-0.7
2
42.9
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029007
Chromosome:
PEDO01015319.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026398
110 - 1948
1839