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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015324.1_846_926_R

Intron Information:

Intron Rank:
133533
Intron Class:
major
Intron Phase:
Intron Coordinates:
846 - 926
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTATTA
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
ACATGCTGACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
68.4
32
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
88.4
0.86
0.7
81.1
30.9
Minor 5ss
42.2
-0.9
3
56
48.1
Minor BPS
43.5
-0.4
2
51.04
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019107
Chromosome:
PEDO01015324.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017863
21 - 984
964