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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015329.1_4443_4931_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4443 - 4931
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
AACAGGTGAAAG
Flanking Amino Acid:
FLGVPYSHDQGPCQNLTCFP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
85.4
0.8
0.8
77.8
36.7
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
34.2
-1.3
2.2
33.91
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019298
Chromosome:
PEDO01015329.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030389
758 - 5214
4457