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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015374.1_14112_18606_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14112 - 18606
Intron Length:
4495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TGGCACTCAGCG
Flanking Amino Acid:
LKMLQATGGKGYFDAHSLAM
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
79.3
0.66
0.7
72.6
25.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
43.2
-0.6
1.9
47.53
44.8

Associated Gene:

Gene:
HEY2
Ensembl Gene ID:
ENSAPLG00000020017
Chromosome:
PEDO01015374.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019059
13432 - 22783
9352