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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015396.1_499_595_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
499 - 595
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTCTCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCCCCCCCATCT
Flanking Amino Acid:
KIRSIKVESGPWVGFEYPEY
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.5
42
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
79.6
0.67
0.7
73.3
24.9
Minor 5ss
35.8
-1.6
3.2
49.6
39.8
Minor BPS
41.2
-0.5
2
54.09
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013157
Chromosome:
PEDO01015396.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013695
150 - 868
719