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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015430.1_648_3467_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
648 - 3467
Intron Length:
2820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
ACATCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCCCCACATCC
Flanking Amino Acid:
RSRRGSCSTNRDCLRQVINY
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65.4
0.35
0.9
55.2
35.5
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
43.3
-0.5
2
54.27
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021999
Chromosome:
PEDO01015430.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008514
3 - 4554
4552