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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015462.1_467_1343_R

Intron Information:

Intron Rank:
130300
Intron Class:
major
Intron Phase:
Intron Coordinates:
467 - 1343
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTGGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCCGCTCTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.6
39.4
Major BPS
79
0.72
1
69
38.9
Major PPT
69
0.43
1
62.2
39.8
Minor 5ss
33.8
-1.8
2.8
32.8
41.8
Minor BPS
42.3
-0.7
1.7
38.78
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017311
Chromosome:
PEDO01015462.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028824
208 - 1544
1337