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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015469.1_203_2159_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

203 - 2159

Intron Length:

1957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGCAAA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TTGTCCTTAATC

Flanking Amino Acid:

RLLLAFQKKEHEKEVQNR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

33.2

Major BPS

80.4

0.76

80.3

31.8

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

-1.7

2.9

39.8

40.3

Minor BPS

1.11

86.22

31.9

Associated Gene:

Gene:

CBX2

Ensembl Gene ID:

ENSAPLG00000023532

Chromosome:

PEDO01015469.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027363

177 - 3930

3754