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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015480.1_1878_13768_R

Intron Information:

Intron Rank:
145064
Intron Class:
major
Intron Phase:
Intron Coordinates:
1878 - 13768
Intron Length:
11891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
ATCATCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTCCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.9
40.1
Major BPS
79.4
0.73
1
80.1
32
Major PPT
73.5
0.53
0.8
70.6
35.4
Minor 5ss
26.3
-2.7
3.3
30
43
Minor BPS
77
0.84
1.6
87.11
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025445
Chromosome:
PEDO01015480.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026364
1348 - 14104
12757