Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015491.1_2142_3048_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2142 - 3048

Intron Length:

907

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTATCTCCATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

GTCTGCTAAACT

Flanking Amino Acid:

KLTLERFQRENPGFDFSGAE

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.4

1.12

0.8

39.5

Major BPS

0.82

0.8

83.9

25.3

Major PPT

76.2

0.59

0.9

75.5

34.1

Minor 5ss

23.2

-3.1

3.6

31.6

42.6

Minor BPS

56.1

0.27

2.1

76.24

46.3

Associated Gene:

Gene:

NUDCD2

Ensembl Gene ID:

ENSAPLG00000013327

Chromosome:

PEDO01015491.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024140

21 - 3633

3613

ENSAPLT00000013880

21 - 3633

3613