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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015495.1_3664_3870_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3664 - 3870
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATCCAT
U12 Branch Point Sequence:
TCTTCCTGAGCC
Flanking Amino Acid:
TEICSKITDIDIDKVMINLK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
51.8
0.04
1.4
64.4
42.8
Major PPT
79.7
0.67
0.9
76.4
37.6
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
64.8
0.44
1.7
75.45
40.9

Associated Gene:

Gene:
MED16
Ensembl Gene ID:
ENSAPLG00000006842
Chromosome:
PEDO01015495.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007105
339 - 5309
4971