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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_12630_12902_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12630 - 12902
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTCCACA
Flanking Amino Acid:
GPEGVRSDPLALELEPSRGT
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.2
52.4
46.9
Major BPS
100
1.24
0.5
100
0
Major PPT
88.2
0.86
0.6
84.1
24.1
Minor 5ss
34.6
-1.7
3.4
37.8
47
Minor BPS
61.7
0.36
2
79.34
37.2

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030526
4215 - 23356
19142
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176