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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_13032_13639_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13032 - 13639
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTTAG
U12 Branch Point Sequence:
TGCCCCTTAGTG
Flanking Amino Acid:
SIKYSICTSTAPDFASTKEE
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
47
-0.1
1.5
42.9
40.1
Major PPT
72.8
0.51
1
71.9
33
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
54.7
0.01
1.7
57.65
44

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142