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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_13866_13960_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13866 - 13960
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCGGAACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTCCCGGAACC
Flanking Amino Acid:
ELTYRVPTRHSTSLIPPVYT
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
67.8
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
55.1
0.12
1
46.8
39.5
Minor 5ss
25.9
-2.8
2.9
30.5
42.6
Minor BPS
51.4
0.02
2.2
68.78
42.5

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142