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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_14090_14276_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14090 - 14276
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
ACTGGATCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTTGCTGACT
Flanking Amino Acid:
LLNKGVMPVEWAFLFPSDQK
Intron Amino Acid Position:
1107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
58.2
0.18
0.9
47.8
40.1
Minor 5ss
38.2
-1.3
3.4
52.7
46.4
Minor BPS
48.1
-0
2.3
75.11
42.1

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030526
4215 - 23356
19142
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176