Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_18894_19352_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18894 - 19352

Intron Length:

459

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

TGGGGTTTCACC

Flanking Amino Acid:

GSAKLTVPGQAATLSHHKIC

Intron Amino Acid Position:

1343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.4

1.05

0.8

80.7

33.8

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

85.6

0.8

0.7

80.7

24.6

Minor 5ss

34.5

-1.8

2.8

42.4

44.3

Minor BPS

44.1

-0.4

2.2

53.95

44.5

Associated Gene:

Gene:

CFAP65

Ensembl Gene ID:

ENSAPLG00000012800

Chromosome:

PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030526

4215 - 23356

19142

ENSAPLT00000022770

3181 - 23356

20176

ENSAPLT00000013334

4215 - 22431

18217

ENSAPLT00000041661

3181 - 23356

20176