About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015510.1_20698_21042_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20698 - 21042
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAA
U12 Branch Point Sequence:
TTCTCTCCAACA
Flanking Amino Acid:
EPSAVVRKYKTLPPIKNHPV
Intron Amino Acid Position:
1498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
53.3
0.08
1.1
61
37.5
Major PPT
77.8
0.63
0.8
73.9
29.8
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
56.1
0.19
1.9
72.2
40

Associated Gene:

Gene:
CFAP65
Ensembl Gene ID:
ENSAPLG00000012800
Chromosome:
PEDO01015510.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022770
3181 - 23356
20176
ENSAPLT00000013334
4215 - 22431
18217
ENSAPLT00000041661
3181 - 23356
20176
ENSAPLT00000030526
4215 - 23356
19142